I recently created a new hugo theme (here is a link to the repo GitHub - kishenarayan/drishtikon) and I have successfully been able to use it as a submodule for the theme of my personal blog (which I am hosting through github pages linked here: https://kishenarayan.github.io/).
The main issue is that when I use hugo server to see my site on localhost, the links on the writing page under research to ArXiv and Google Scholar render as links. These links are the summary for a project which is written in markdown (you can find the file in content/writings). However, when I then push the changes to github and deploy using github pages, none of the markup which was defined in the markdown files comes through. I have attached the images below of this discrepancy.
Here is what it should look like and what is being shown in the localhost.
Here is what I am seeing on github pages.
When browsing through past topics, I first thought it was a CRLF vs LF issue, but after changing those settings on my editor (I am using IntelliJ IDEA Community Edition on a Windows laptop), nothing changed. Any ideas on how to resolve this?

