No.
Without Bootstrap, the height of the highlighted lines is consistent regardless of whether lineNumbersInTable is true or false.

With Bootstrap, the height of the of the highlighted lines is inconsistent when lineNumbersInTable is true.

Try it:
git clone --single-branch -b hugo-forum-topic-42304 https://github.com/jmooring/hugo-testing hugo-forum-topic-42304
cd hugo-forum-topic-42304
hugo server